#include <Mesh.hpp>

Collaboration diagram for DNDS::Geom::UnstructuredMeshSerialRW:

Public Types
using	PartitionOptions = Geom::PartitionOptions

Public Member Functions
template<class tC2n , class tCoordExt >
void	__GetCoordsSerial (const tC2n &c2n, tSmallCoords &cs, tCoordExt &coo)
	directly load coords; gets faulty if isPeriodic!, analog of mesh's method

template<class tC2n , class tC2nPbi , class tCoordExt >
void	__GetCoordsOnElemSerial (const tC2n &c2n, const tC2nPbi &c2nPbi, tSmallCoords &cs, tCoordExt &coo)
	specially for periodicity, analog of mesh's method

void	GetCoordsOnCellSerial (index iCell, tSmallCoords &cs, tCoord &coo)
	analog of mesh's method

	UnstructuredMeshSerialRW (const decltype(mesh) &n_mesh, DNDS::MPI_int n_mRank)

void	ReadFromCGNSSerial (const std::string &fName, const t_FBCName_2_ID &FBCName_2_ID)
	reads a cgns file as serial input

auto	ReadFromCGNSSerial (const std::string &fName)

void	ReadFromOpenFOAMAndConvertSerial (const std::string &fName, const std::map< std::string, std::string > &nameMapping, const t_FBCName_2_ID &FBCName_2_ID=FBC_Name_2_ID_Default)

void	Deduplicate1to1Periodic (real searchEps=1e-8)

void	BuildCell2Cell ()
	build cell2cell topology, with node-neighbors included

void	BuildNode2Node ()

void	MeshPartitionCell2Cell (const PartitionOptions &options)

void	PartitionReorderToMeshCell2Cell ()

void	ClearSerial ()

void	BuildSerialOut ()
	should be called to build data for serial out

void	GetCurrentOutputArrays (int flag, tCoordPair &coordOut, tAdjPair &cell2nodeOut, tPbiPair &cell2nodePbiOut, tElemInfoArrayPair &cellElemInfoOut, index &nCell, index &nNode)

void	PrintSerialPartPltBinaryDataArray (std::string fname, int arraySiz, int arraySizPoint, const tFGetName &names, const tFGetData &data, const tFGetName &namesPoint, const tFGetData &dataPoint, double t, int flag)
	names(idata) data(idata, ivolume) https://tecplot.azureedge.net/products/360/current/360_data_format_guide.pdf

void	PrintSerialPartVTKDataArray (std::string fname, std::string seriesName, int arraySiz, int vecArraySiz, int arraySizPoint, int vecArraySizPoint, const tFGetName &names, const tFGetData &data, const tFGetName &vectorNames, const tFGetVecData &vectorData, const tFGetName &namesPoint, const tFGetData &dataPoint, const tFGetName &vectorNamesPoint, const tFGetVecData &vectorDataPoint, double t, int flag=0)
	names(idata) data(idata, ivolume)

void	SetASCIIPrecision (int n)

void	SetVTKFloatEncodeMode (const std::string &v)

Public Attributes
DNDS::ssp< UnstructuredMesh >	mesh

MeshReaderMode	mode {UnknownMode}

bool	dataIsSerialOut = false

bool	dataIsSerialIn = false

tCoord	coordSerial

tAdj	cell2nodeSerial

tAdj	bnd2nodeSerial

tElemInfoArray	cellElemInfoSerial

tElemInfoArray	bndElemInfoSerial

tAdj2	bnd2cellSerial

tAdj1	cell2cellOrigSerial

tAdj1	node2nodeOrigSerial

tAdj1	bnd2bndOrigSerial

tPbi	cell2nodePbiSerial

tPbi	bnd2nodePbiSerial

tAdj	cell2cellSerial

tAdj	node2nodeSerial

tAdj	cell2cellSerialFacial

tAdj	node2cellSerial

tAdj	node2faceSerial

tAdj	node2edgeSerial

tAdj	cell2faceSerial

tAdj	cell2edgeSerial

tAdj	face2nodeSerial

tAdj	face2faceSerial

tAdj	face2edgeSerial

tAdj	face2cellSerial

tAdj	edge2nodeSerial

tAdj	edge2cellSerial

tAdj	edge2edgeSerial

tAdj	edge2faceSerial

DNDS::ArrayTransformerType< tCoord::element_type >::Type	coordSerialOutTrans

DNDS::ArrayTransformerType< tAdj::element_type >::Type	cell2nodeSerialOutTrans

DNDS::ArrayTransformerType< tPbi::element_type >::Type	cell2nodePbiSerialOutTrans

DNDS::ArrayTransformerType< tAdj::element_type >::Type	bnd2nodeSerialOutTrans

DNDS::ArrayTransformerType< tElemInfoArray::element_type >::Type	cellElemInfoSerialOutTrans

DNDS::ArrayTransformerType< tElemInfoArray::element_type >::Type	bndElemInfoSerialOutTrans

std::vector< DNDS::MPI_int >	cellPartition

std::vector< DNDS::MPI_int >	nodePartition

std::vector< DNDS::MPI_int >	bndPartition

DNDS::MPI_int	mRank {0}

DNDS::MPI_int	cnPart {0}

Detailed Description

Definition at line 847 of file Mesh.hpp.

Member Typedef Documentation

◆ PartitionOptions

using DNDS::Geom::UnstructuredMeshSerialRW::PartitionOptions = Geom::PartitionOptions

Definition at line 849 of file Mesh.hpp.

Constructor & Destructor Documentation

◆ UnstructuredMeshSerialRW()

DNDS::Geom::UnstructuredMeshSerialRW::UnstructuredMeshSerialRW	(	const decltype(mesh) &	n_mesh,
		DNDS::MPI_int	n_mRank
	)

inline

Definition at line 958 of file Mesh.hpp.

Member Function Documentation

◆ __GetCoordsOnElemSerial()

template<class tC2n , class tC2nPbi , class tCoordExt >

void DNDS::Geom::UnstructuredMeshSerialRW::__GetCoordsOnElemSerial	(	const tC2n &	c2n,
		const tC2nPbi &	c2nPbi,
		tSmallCoords &	cs,
		tCoordExt &	coo
	)

inline

specially for periodicity, analog of mesh's method

Definition at line 938 of file Mesh.hpp.

Here is the caller graph for this function:

◆ __GetCoordsSerial()

template<class tC2n , class tCoordExt >

void DNDS::Geom::UnstructuredMeshSerialRW::__GetCoordsSerial	(	const tC2n &	c2n,
		tSmallCoords &	cs,
		tCoordExt &	coo
	)

inline

directly load coords; gets faulty if isPeriodic!, analog of mesh's method

Definition at line 924 of file Mesh.hpp.

Here is the caller graph for this function:

◆ BuildCell2Cell()

void DNDS::Geom::UnstructuredMeshSerialRW::BuildCell2Cell ( )

build cell2cell topology, with node-neighbors included

Todo:: add support for only face-neighbors

TODO: abstract these: invert cone (like node 2 cell -> cell 2 node) (also support operating on pair)

** override: point-complete cell2cell info!

mesh->dim - 1 is a simple method

Definition at line 327 of file Mesh_Serial_BuildCell2Cell.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ BuildNode2Node()

void DNDS::Geom::UnstructuredMeshSerialRW::BuildNode2Node ( )

◆ BuildSerialOut()

void DNDS::Geom::UnstructuredMeshSerialRW::BuildSerialOut ( )

should be called to build data for serial out

Definition at line 202 of file Mesh.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ ClearSerial()

void DNDS::Geom::UnstructuredMeshSerialRW::ClearSerial ( )

inline

Definition at line 999 of file Mesh.hpp.

◆ Deduplicate1to1Periodic()

void DNDS::Geom::UnstructuredMeshSerialRW::Deduplicate1to1Periodic ( real searchEps = 1e-8 )

below are all periodic code

Definition at line 14 of file Mesh_Serial_BuildCell2Cell.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ GetCoordsOnCellSerial()

void DNDS::Geom::UnstructuredMeshSerialRW::GetCoordsOnCellSerial	(	index	iCell,
		tSmallCoords &	cs,
		tCoord &	coo
	)

inline

analog of mesh's method

Definition at line 950 of file Mesh.hpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ GetCurrentOutputArrays()

void DNDS::Geom::UnstructuredMeshSerialRW::GetCurrentOutputArrays	(	int	flag,
		tCoordPair &	coordOut,
		tAdjPair &	cell2nodeOut,
		tPbiPair &	cell2nodePbiOut,
		tElemInfoArrayPair &	cellElemInfoOut,
		index &	nCell,
		index &	nNode
	)

only non-ghost cells are output

need all the nodes with ghost

Definition at line 19 of file Mesh_Plts.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ MeshPartitionCell2Cell()

void DNDS::Geom::UnstructuredMeshSerialRW::MeshPartitionCell2Cell ( const PartitionOptions & options )

preset hyper config, should be optional in the future

assuming all adj point to local numbers now

Todo:: //TODO: parmetis needs testing!

assuming homogenous

Definition at line 8 of file Mesh_Serial_Partition.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ PartitionReorderToMeshCell2Cell()

void DNDS::Geom::UnstructuredMeshSerialRW::PartitionReorderToMeshCell2Cell ( )

Definition at line 104 of file Mesh.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ PrintSerialPartPltBinaryDataArray()

void DNDS::Geom::UnstructuredMeshSerialRW::PrintSerialPartPltBinaryDataArray	(	std::string	fname,
		int	arraySiz,
		int	arraySizPoint,
		const tFGetName &	names,
		const tFGetData &	data,
		const tFGetName &	namesPoint,
		const tFGetData &	dataPoint,
		double	t,
		int	flag
	)

names(idata) data(idata, ivolume) https://tecplot.azureedge.net/products/360/current/360_data_format_guide.pdf

Todo:: //TODO add support for bnd export

full: write both grid and data

Tecplot is sensitive to the correctness of min/max val

2d or 3d elems

Definition at line 126 of file Mesh_Plts.cpp.

Here is the call graph for this function:

◆ PrintSerialPartVTKDataArray()

void DNDS::Geom::UnstructuredMeshSerialRW::PrintSerialPartVTKDataArray	(	std::string	fname,
		std::string	seriesName,
		int	arraySiz,
		int	vecArraySiz,
		int	arraySizPoint,
		int	vecArraySizPoint,
		const tFGetName &	names,
		const tFGetData &	data,
		const tFGetName &	vectorNames,
		const tFGetVecData &	vectorData,
		const tFGetName &	namesPoint,
		const tFGetData &	dataPoint,
		const tFGetName &	vectorNamesPoint,
		const tFGetVecData &	vectorDataPoint,
		double	t,
		int	flag = `0`
	)

names(idata) data(idata, ivolume)

referencing https://docs.vtk.org/en/latest/design_documents/VTKFileFormats.html

Todo:: //TODO add support for bnd export

Parameters

fname
arraySiz
vecArraySiz
arraySizPoint
vecArraySizPoint
names
data
vectorNames
vectorData
namesPoint
dataPoint
vectorNamesPoint
vectorDataPoint
t
flag

cout << uint8_t(v) is ill-posed

Definition at line 753 of file Mesh_Plts.cpp.

Here is the call graph for this function:

◆ ReadFromCGNSSerial() [1/2]

auto DNDS::Geom::UnstructuredMeshSerialRW::ReadFromCGNSSerial ( const std::string & fName )

inline

Definition at line 974 of file Mesh.hpp.

Here is the call graph for this function:

◆ ReadFromCGNSSerial() [2/2]

void DNDS::Geom::UnstructuredMeshSerialRW::ReadFromCGNSSerial	(	const std::string &	fName,
		const t_FBCName_2_ID &	FBCName_2_ID
	)

reads a cgns file as serial input

the file MUST consist of one CGNS base node, and multiple zones within. All the zones are treated as a whole unstructured grid Proofed on .cgns files generated from Pointwise

Warning: //!Pointwise Options: with "Include Donor Information", "Treat Structured as Unstructured", "Unstructured Interfaces = Node-to-Node"

Todo:: //TODO Add some multi thread here!

Parameters

fName file name of .cgns file

parallel done!!! now serial!!!

purely serial

only supports unstructured

convert to 0 based; pointing to zonal index

initialized as inner,need new way of doing vol condition

Todo:: //TODO: TEST with actual data (MIXED TYPE) !!!!!!

convert to 0 based; pointing to zonal index

initialized as inner,need new way of doing vol condition

setting BC code

only supports unstructured

Definition at line 245 of file Mesh_Serial_ReadFromCGNS.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ ReadFromOpenFOAMAndConvertSerial()

void DNDS::Geom::UnstructuredMeshSerialRW::ReadFromOpenFOAMAndConvertSerial	(	const std::string &	fName,
		const std::map< std::string, std::string > &	nameMapping,
		const t_FBCName_2_ID &	FBCName_2_ID = `FBC_Name_2_ID_Default`
	)

parallel done!!! now serial!!!

Definition at line 630 of file Mesh_Serial_ReadFromCGNS.cpp.

Here is the call graph for this function:

◆ SetASCIIPrecision()

void DNDS::Geom::UnstructuredMeshSerialRW::SetASCIIPrecision ( int n )

inline

Definition at line 1064 of file Mesh.hpp.

Here is the call graph for this function:

◆ SetVTKFloatEncodeMode()

void DNDS::Geom::UnstructuredMeshSerialRW::SetVTKFloatEncodeMode ( const std::string & v )

inline

Definition at line 1065 of file Mesh.hpp.

Member Data Documentation

◆ bnd2bndOrigSerial

tAdj1 DNDS::Geom::UnstructuredMeshSerialRW::bnd2bndOrigSerial

Definition at line 871 of file Mesh.hpp.

◆ bnd2cellSerial

tAdj2 DNDS::Geom::UnstructuredMeshSerialRW::bnd2cellSerial

Definition at line 868 of file Mesh.hpp.

◆ bnd2nodePbiSerial

tPbi DNDS::Geom::UnstructuredMeshSerialRW::bnd2nodePbiSerial

Definition at line 873 of file Mesh.hpp.

◆ bnd2nodeSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::bnd2nodeSerial

Definition at line 865 of file Mesh.hpp.

◆ bnd2nodeSerialOutTrans

DNDS::ArrayTransformerType<tAdj::element_type>::Type DNDS::Geom::UnstructuredMeshSerialRW::bnd2nodeSerialOutTrans

Definition at line 910 of file Mesh.hpp.

◆ bndElemInfoSerial

tElemInfoArray DNDS::Geom::UnstructuredMeshSerialRW::bndElemInfoSerial

Definition at line 867 of file Mesh.hpp.

◆ bndElemInfoSerialOutTrans

DNDS::ArrayTransformerType<tElemInfoArray::element_type>::Type DNDS::Geom::UnstructuredMeshSerialRW::bndElemInfoSerialOutTrans

Definition at line 912 of file Mesh.hpp.

◆ bndPartition

std::vector<DNDS::MPI_int> DNDS::Geom::UnstructuredMeshSerialRW::bndPartition

Definition at line 916 of file Mesh.hpp.

◆ cell2cellOrigSerial

tAdj1 DNDS::Geom::UnstructuredMeshSerialRW::cell2cellOrigSerial

Definition at line 869 of file Mesh.hpp.

◆ cell2cellSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::cell2cellSerial

Definition at line 885 of file Mesh.hpp.

◆ cell2cellSerialFacial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::cell2cellSerialFacial

Definition at line 888 of file Mesh.hpp.

◆ cell2edgeSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::cell2edgeSerial

Definition at line 895 of file Mesh.hpp.

◆ cell2faceSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::cell2faceSerial

Definition at line 894 of file Mesh.hpp.

◆ cell2nodePbiSerial

tPbi DNDS::Geom::UnstructuredMeshSerialRW::cell2nodePbiSerial

Definition at line 872 of file Mesh.hpp.

◆ cell2nodePbiSerialOutTrans

DNDS::ArrayTransformerType<tPbi::element_type>::Type DNDS::Geom::UnstructuredMeshSerialRW::cell2nodePbiSerialOutTrans

Definition at line 909 of file Mesh.hpp.

◆ cell2nodeSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::cell2nodeSerial

Definition at line 864 of file Mesh.hpp.

◆ cell2nodeSerialOutTrans

DNDS::ArrayTransformerType<tAdj::element_type>::Type DNDS::Geom::UnstructuredMeshSerialRW::cell2nodeSerialOutTrans

Definition at line 908 of file Mesh.hpp.

◆ cellElemInfoSerial

tElemInfoArray DNDS::Geom::UnstructuredMeshSerialRW::cellElemInfoSerial

Definition at line 866 of file Mesh.hpp.

◆ cellElemInfoSerialOutTrans

DNDS::ArrayTransformerType<tElemInfoArray::element_type>::Type DNDS::Geom::UnstructuredMeshSerialRW::cellElemInfoSerialOutTrans

Definition at line 911 of file Mesh.hpp.

◆ cellPartition

std::vector<DNDS::MPI_int> DNDS::Geom::UnstructuredMeshSerialRW::cellPartition

Definition at line 914 of file Mesh.hpp.

◆ cnPart

DNDS::MPI_int DNDS::Geom::UnstructuredMeshSerialRW::cnPart {0}

Definition at line 918 of file Mesh.hpp.

◆ coordSerial

tCoord DNDS::Geom::UnstructuredMeshSerialRW::coordSerial

Definition at line 863 of file Mesh.hpp.

◆ coordSerialOutTrans

DNDS::ArrayTransformerType<tCoord::element_type>::Type DNDS::Geom::UnstructuredMeshSerialRW::coordSerialOutTrans

Definition at line 907 of file Mesh.hpp.

◆ dataIsSerialIn

bool DNDS::Geom::UnstructuredMeshSerialRW::dataIsSerialIn = false

Definition at line 861 of file Mesh.hpp.

◆ dataIsSerialOut

bool DNDS::Geom::UnstructuredMeshSerialRW::dataIsSerialOut = false

Definition at line 860 of file Mesh.hpp.

◆ edge2cellSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::edge2cellSerial

Definition at line 903 of file Mesh.hpp.

◆ edge2edgeSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::edge2edgeSerial

Definition at line 904 of file Mesh.hpp.

◆ edge2faceSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::edge2faceSerial

Definition at line 905 of file Mesh.hpp.

◆ edge2nodeSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::edge2nodeSerial

Definition at line 902 of file Mesh.hpp.

◆ face2cellSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::face2cellSerial

Definition at line 900 of file Mesh.hpp.

◆ face2edgeSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::face2edgeSerial

Definition at line 899 of file Mesh.hpp.

◆ face2faceSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::face2faceSerial

Definition at line 898 of file Mesh.hpp.

◆ face2nodeSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::face2nodeSerial

Definition at line 897 of file Mesh.hpp.

◆ mesh

DNDS::ssp<UnstructuredMesh> DNDS::Geom::UnstructuredMeshSerialRW::mesh

Definition at line 856 of file Mesh.hpp.

◆ mode

MeshReaderMode DNDS::Geom::UnstructuredMeshSerialRW::mode {UnknownMode}

Definition at line 858 of file Mesh.hpp.

◆ mRank

DNDS::MPI_int DNDS::Geom::UnstructuredMeshSerialRW::mRank {0}

Definition at line 918 of file Mesh.hpp.

◆ node2cellSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::node2cellSerial

Definition at line 890 of file Mesh.hpp.

◆ node2edgeSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::node2edgeSerial

Definition at line 892 of file Mesh.hpp.

◆ node2faceSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::node2faceSerial

Definition at line 891 of file Mesh.hpp.

◆ node2nodeOrigSerial

tAdj1 DNDS::Geom::UnstructuredMeshSerialRW::node2nodeOrigSerial

Definition at line 870 of file Mesh.hpp.

◆ node2nodeSerial

tAdj DNDS::Geom::UnstructuredMeshSerialRW::node2nodeSerial

Definition at line 886 of file Mesh.hpp.

◆ nodePartition

std::vector<DNDS::MPI_int> DNDS::Geom::UnstructuredMeshSerialRW::nodePartition

Definition at line 915 of file Mesh.hpp.

The documentation for this struct was generated from the following files:

/home/runner/work/DNDSR/DNDSR/src/Geom/Mesh.hpp
/home/runner/work/DNDSR/DNDSR/src/Geom/Mesh.cpp
/home/runner/work/DNDSR/DNDSR/src/Geom/Mesh_Plts.cpp
/home/runner/work/DNDSR/DNDSR/src/Geom/Mesh_Serial_BuildCell2Cell.cpp
/home/runner/work/DNDSR/DNDSR/src/Geom/Mesh_Serial_Partition.cpp
/home/runner/work/DNDSR/DNDSR/src/Geom/Mesh_Serial_ReadFromCGNS.cpp

Public Types

Public Member Functions

Public Attributes

Detailed Description

Member Typedef Documentation

◆ PartitionOptions

Constructor & Destructor Documentation

◆ UnstructuredMeshSerialRW()

Member Function Documentation

◆ __GetCoordsOnElemSerial()

◆ __GetCoordsSerial()

◆ BuildCell2Cell()

◆ BuildNode2Node()

◆ BuildSerialOut()

◆ ClearSerial()

◆ Deduplicate1to1Periodic()

◆ GetCoordsOnCellSerial()

◆ GetCurrentOutputArrays()

◆ MeshPartitionCell2Cell()

◆ PartitionReorderToMeshCell2Cell()

◆ PrintSerialPartPltBinaryDataArray()

◆ PrintSerialPartVTKDataArray()

◆ ReadFromCGNSSerial() [1/2]

◆ ReadFromCGNSSerial() [2/2]

◆ ReadFromOpenFOAMAndConvertSerial()

◆ SetASCIIPrecision()

◆ SetVTKFloatEncodeMode()

Member Data Documentation

◆ bnd2bndOrigSerial

◆ bnd2cellSerial

◆ bnd2nodePbiSerial

◆ bnd2nodeSerial

◆ bnd2nodeSerialOutTrans

◆ bndElemInfoSerial

◆ bndElemInfoSerialOutTrans

◆ bndPartition

◆ cell2cellOrigSerial

◆ cell2cellSerial

◆ cell2cellSerialFacial

◆ cell2edgeSerial

◆ cell2faceSerial

◆ cell2nodePbiSerial

◆ cell2nodePbiSerialOutTrans

◆ cell2nodeSerial

◆ cell2nodeSerialOutTrans

◆ cellElemInfoSerial

◆ cellElemInfoSerialOutTrans

◆ cellPartition

◆ cnPart

◆ coordSerial

◆ coordSerialOutTrans

◆ dataIsSerialIn

◆ dataIsSerialOut

◆ edge2cellSerial

◆ edge2edgeSerial

◆ edge2faceSerial

◆ edge2nodeSerial

◆ face2cellSerial

◆ face2edgeSerial

◆ face2faceSerial

◆ face2nodeSerial

◆ mesh

◆ mode

◆ mRank

◆ node2cellSerial

◆ node2edgeSerial

◆ node2faceSerial

◆ node2nodeOrigSerial

◆ node2nodeSerial

◆ nodePartition